TL;DR
Microsoft Security Scanner is a good starting point, but it’s not enough for high confidence in a clean system. Combining it with other tools and techniques – including bootable scanners, memory scanning, rootkit hunters, and regular updates – significantly improves your security posture.
Improving System Cleanliness Beyond Microsoft Security Scanner
- Understand the Limitations of Microsoft Security Scanner:
- It’s an on-demand scanner; it doesn’t provide continuous protection.
- Its detection rates, while good, aren’t perfect and can be bypassed by sophisticated malware.
- It primarily focuses on known threats.
- Run a Bootable Scanner: This is the single biggest improvement you can make.
- Bootable scanners run outside of your operating system, making it harder for malware to hide.
- Popular options include:
- Kaspersky Rescue Disk: Free and effective. Download from Kaspersky.
- Bitdefender Rescue CD: Another excellent free option. Download from Bitdefender.
- Create a bootable USB drive using the provided tools on their websites.
- Boot your computer from the USB and follow the scanner’s instructions.
- Use a Second-Opinion Scanner: Run another scanner *after* Microsoft Security Scanner and the bootable scanner.
- This can catch anything missed by the first two scans.
- Consider:
- Malwarebytes Anti-Malware (Free): Excellent at detecting and removing a wide range of threats. Download from Malwarebytes. Run a full scan.
- HitmanPro: Cloud-based scanner that uses multiple engines. (Paid, but offers a free trial). Download from HitmanPro.
- Scan Memory: Malware often hides in RAM.
- Process Explorer (Sysinternals): While not a dedicated memory scanner, it can help identify suspicious processes. Download from Microsoft.
- Look for processes with unusual names or locations. Right-click on a process and select ‘Properties’ to view details.
- Run a Rootkit Hunter: Rootkits are designed to hide malware deeply within the system.
- TDSSKiller (Kaspersky): Specifically targets rootkits. Download from Kaspersky.
- Run a full scan and remove any detected threats.
- Check System Files: Verify the integrity of critical system files.
- Open Command Prompt as an administrator (search for ‘cmd’, right-click, ‘Run as administrator’).
- Run
sfc /scannow. This will scan and repair corrupted Windows system files.sfc /scannow
- Update Everything: Outdated software is a major security risk.
- Windows Updates: Ensure you have the latest updates installed.
- Drivers: Update your device drivers through Device Manager or from the manufacturer’s website.
- Applications: Use built-in update features or download the latest versions from official sources.
- Review Startup Programs: Prevent malware from automatically launching when you start your computer.
- Press
Win + R, typemsconfigand press Enter. - Go to the ‘Services’ tab and disable any suspicious services. Be careful not to disable essential system services!
- Go to the ‘Startup’ tab (or Task Manager -> Startup apps in Windows 10/11) and disable unnecessary programs.
- Press
Important Note: Always back up your important data before performing any major system changes or running security scans. While these tools are generally safe, there’s always a risk of unintended consequences.

